(*为第一作者文章,#为通讯作者文章)
Tan S, Liu L, Jiao JY, Li MM, Hu CJ, Lv AP, Qi YL, Li YX, Rao YZ, Qu YN, Jiang HC, Soo RM, Evans PN, Hua ZS (*), Li WJ (*). Exploring the origins and evolution of oxygenic and anoxygenic photosynthesis in deeply branched Cyanobacteriota, Mol. Biol. Evol. Jul 23: msae151 (2024).
Qi YL, Chen YT, Xie YG, Li YX, Rao YZ, Li MM, Cao XR, Chen L, Xie QJ, Qu YN, Yuan ZX, Xiao ZC, Lu L, Jiao JY, Shu WS, Li WJ (*), Hedlund BP (*), Hua ZS (*). Analysis of nearly 3,000 archaeal genomes from terrestrial geothermal springs sheds light on interconnected biogeochemical processes. Nat. Commun. 15, 4066 (2024).
Luo ZH, Li Q, Xie YG, Lv AP, Qi YL, Li MM, Qu YN, Liu ZT, Li YX, Rao YZ, Jiao JY, Liu L, Rao MPN, Hedlund B, Evans P, Fang Y, Shu WS, Huang LN (*), Li WJ (*), Hua ZS (*). Temperature, pH, and oxygen availability contributed to the functional differentiation of ancient Nitrososphaeria. ISME J. 18, wrad031 (2024).
Wang JJ, Qu YN, Evans PN, Guo QH, Zhou FW, Nie M, Jin QS, Zhang Y, Zhai XM, Zhou M, Yu ZG, Fu QL, Xie YG, Hedlund BP, Li WJ, Hua ZS (*), Wang ZM (*), Wang YX. Evidence for nontraditional mcr-containing archaea contributing to biological methanogenesis in geothermal springs. Sci. Adv. 9, eadg6004 (2023).
Rao YZ, Li YX, Li ZW, Qu YN, Qi YL, Jiao JY, Shu WS, Hua ZS (*), Li WJ (*). Metagenomic Discovery of “Candidatus Parvarchaeales”-Related Lineages Sheds Light on Adaptation and Diversification from Neutral-Thermal to Acidic-Mesothermal Environments. mSystems 8, e01252-22 (2023).
Zhang Y, Liu T, Li MM, Hua ZS (*), Evans P, Qu YN, Tan S, Zheng M, Lu H, Jiao JY, Lücker S, Daims H, Li WJ (*), Guo JH (*). Hot spring distribution and survival mechanisms of thermophilic comammox Nitrospira. ISME J. 17, 993–1003 (2023).
Qu YN, Rao YZ, Qi YL, Li YX, Li A, Palmer M, Hedlund BP, Shu WS, Evans PN, Nie GX, Hua ZS (*), Li WJ (*). Panguiarchaeum symbiosum, a potential hyperthermophilic symbiont in the TACK superphylum. Cell Rep. 42, 112158 (2023).
Xie YG, Luo ZH, Fang BZ, Jiao JY, Xie QJ, Cao XR, Qu YN, Qi YL, Rao YZ, Li YX, Liu YH, Li A, Seymour C, Palmer M, Hedlund BP, Li WJ (*), Hua ZS (*). Functional differentiation determines the molecular basis of the symbiotic lifestyle of Ca. Nanohaloarchaeota. Microbiome 10, 172 (2022).
Hua ZS (#), Ouellette M, Makkay A, Papke RT (*), Zhaxybayeva O (*). Nutrient supplementation experiments with saltern microbial communities implicate utilization of DNA as a source of phosphorus. ISME J. 15, 2853–2864 (2021).
Li YX (#), Rao YZ (#), Qi YL, Qu YN, Chen YT, Jiao JY, Shu WS, Jiang HC, Hedlund BP, Hua ZS (*), Wen-Jun Li. Deciphering symbiotic interactions of ‘Candidatus Aenigmarchaeota’ with inferred horizontal gene transfers and co-occurrence networks. mSystems 6, e00606-21 (2021).
Qi YL, Evans P, Li YX, Rao YZ, Qu YN, Tan S, Jiao JY, Chen YT, Hedlund BP, Shu WS, Hua ZS (*), Li WJ (*). Polysaccharide and alkane metabolism drove diversification in thermophilic Ca. Bathyarchaeia. mSystems 6, 4 (2021).
Li JY (#), Hua ZS (#), Liu T (*), Wang CW, Li J, Bai G, Luecker S, Jetten M, Zheng M (*), Guo JH (*). Selective enrichment and metagenomic analysis of three novel comammox Nitrospira in a urine-fed membrane bioreactor. ISME Commun. 1, 7. (2021).
Hua ZS (#), Wang YL (#), Evans PN (#), Qu YN, Goh KM, Rao YZ, Qi YL, Li YX, Huang MJ, Jiao JY, Chen YT, Mao YP, Shu WS, Hozzein W, Hedlund BP, Tyson GW (*), Zhang T (*), Li WJ (*). Insights into the ecological roles and evolution of methyl methyl-coenzyme M reductase (mcr) containing hot spring Archaea. Nat. Commun. 1, 1–11 2019.
Zhang Y (#), Hua ZS (#), Lu H (*), Oehmen A, Guo J (*). Elucidating functional microorganisms and metabolic mechanisms in a novel engineered ecosystem integrating C, N, P and S biotransformation by metagenomics. Water Res. 148, 219–230 (2019).
Hua ZS (#), Qu YN (#), Zhu Q, Zhou EM, Qi YL, Yin YR, Rao YZ, Tian Y, Li YX, Liu L, Castelle CJ, Hedlund BP, Shu WS, Knight R, Li WJ (*). Genomic inference of the metabolism and evolution of the archaeal phylum Aigarchaeota. Nat. Commun. 9, 2832 (2018).
Fang BZ (#), Hua ZS (#), Han MX, Zhang ZT, Wang YH, Yang ZW, Zhang WQ, Xiao M, Li WJ. Nonomuraea cavernae sp. nov., a novel actinobacterium isolated from a karst cave sample. Int. J. Syst. Evol. Microbiol. 67, 4692–4697 (2017).
Yang ZW (#), Salam N (#), Hua ZS (#), Liu BB, Han MX, Fang BZ, Wang D, Xiao M, Hozzein WN, Li WJ. Siccirubricoccus deserti gen. nov., sp. nov., a proteobacterium isolated from a desert sample. Int. J. Syst. Evol. Microbiol. 67, 4862–4867 (2017).
Hua ZS (#), Han YJ (#), Chen LX (#), Liu J, Hu M, Li SJ, Kuang JL, Chain PSG, Huang LN (*), Shu WS (*). Ecological roles of dominant and rare prokaryotes in acid mine drainage revealed by metagenomics and metatranscriptomics. ISME J. 9,1280–1294 (2015).
Li SJ (#), Hua ZS (#), Huang LN, Li J, Shi SH, Chen LX, Liu J, Kuang JL, Hu M, Shu WS. Microbial communities evolve faster in extreme environments. Sci. Rep. doi:10.1038/srep06205 (2014).